- 1
-
Stephan Philippi and Jacob Köhler.
Addressing the problems with life-science databases for traditional
uses and systems biology.
Nature Reviews Genetics, 7(6):482-488, May 2006.
- 2
-
W. Sujansky.
Heterogeneous database integration in biomedicine.
J Biomed Inform, 34(4):285-298, August 2001.
- 3
-
R. Alonso-Calvo et al.
An agent- and ontology-based system for integrating public gene,
protein, and disease databases.
J Biomed Inform, 40(1):17-29, February 2007.
- 4
-
Natalya F. Noy and Mark A. Musen.
The PROMPT suite: interactive tools for ontology merging and
mapping.
Int. J. Hum.-Comput. Stud., 59(6):983-1024, December 2003.
- 5
-
J. Lomax and A. T. McCray.
Mapping the gene ontology into the unified medical language system.
Comparative and functional genomics, 5(4):354-361, 2004.
- 6
-
H. F. Deus, R. Stanislaus, D. F. Veiga, C. Behrens, I. I. Wistuba, J. D. Minna,
H. R. Garner, S. G. Swisher, J. A. Roth, A. M. Correa, B. Broom, K. Coombes,
A. Chang, L. H. Vogel, and J. S. Almeida.
A semantic web management model for integrative biomedical
informatics.
PLoS ONE, 3(8), 2008.
- 7
-
Barry Smith et al.
The OBO Foundry: coordinated evolution of ontologies to support
biomedical data integration.
Nat Biotech, 25(11):1251-1255, November 2007.
- 8
-
Christine Golbreich et al.
OBO and OWL: Leveraging Semantic Web Technologies for the Life
Sciences.
In The sixth International Semantic Web Conference (ISWC
2007), pages 169-182. 2007.
- 9
-
Franz Baader, Diego Calvanese, Deborah Mcguinness, Daniele Nardi, and Peter
Patel-Schneider, editors.
The Description Logic Handbook - Cambridge University Press.
Cambridge University Press, first edition, January 2003.
- 10
-
Marie C. Rousset and Chantal Reynaud.
Knowledge representation for information integration.
Inf. Syst., 29(1):3-22, 2004.
- 11
-
Li Xu and David W. Embley.
Combining the Best of Global-as-View and Local-as-View for Data
Integration.
In Anatoly E. Doroshenko, Terry A. Halpin, Stephen W. Liddle,
Heinrich C. Mayr, Anatoly E. Doroshenko, Terry A. Halpin, Stephen W. Liddle,
and Heinrich C. Mayr, editors, ISTA, volume 48 of LNI, pages
123-136. GI, 2004.
- 12
-
Peter Li, Tom Oinn, Stian Soiland, and Douglas B B. Kell.
Automated manipulation of systems biology models using libSBML
within Taverna workflows.
Bioinformatics, December 2007.
- 13
-
C. Stark et al.
BioGRID: a general repository for interaction datasets.
Nucleic Acids Res, 34(Database issue), January 2006.
- 14
-
The UniProt Consortium.
The universal protein resource (UniProt).
Nucleic Acids Res, 36(Database issue), January 2008.
- 15
-
A. L. Lister, M. Pocock, and A. Wipat.
Integration of constraints documented in SBML, SBO, and the SBML
Manual facilitates validation of biological models.
Journal of Integrative Bioinformatics, 4(3):80+, 2007.
- 16
-
H. Hermjakob et al.
The HUPO PSI's molecular interaction format-a community standard
for the representation of protein interaction data.
Nat Biotechnol, 22(2):177-183, February 2004.
- 17
-
Markus J. Herrgard, Neil Swainston, Paul Dobson, Warwick B. Dunn, Yalcin K.
Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias
Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister,
Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos
Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent,
David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda
Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens
Nielsen, and Douglas B. Kell.
A consensus yeast metabolic network reconstruction obtained from a
community approach to systems biology.
Nat Biotech, 26(10):1155-1160, October 2008.
- 18
-
Holger Wache et al.
Ontology-based integration of information -- a survey of existing
approaches.
In H. Stuckenschmidt, editor, Proceedings of the IJCAI'01
Workshop on Ontologies and Information Sharing, Seattle, Washington, USA, Aug
4-5, pages 108-117, 2001.
- 19
-
Jinguang Gu, Baowen Xu, and Xinmeng Chen.
An XML query rewriting mechanism with multiple ontologies
integration based on complex semantic mapping.
Information Fusion, 9(4):512-522, October 2008.
RBM Home