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Supplementary Material: Annotation of SBML Models Through Rule-Based Semantic Integration

Allyson L. Lister, Phillip Lord, Matthew Pocock, Anil Wipat


Abstract:

This is the supplementary material for our paper accepted at ISMB 2009's Bio-Ontologies Special Interest Group (SIG). This paper is now accessible from Nature Precedings at http://precedings.nature.com/documents/3286/version/1and from the SIG proceedings at http://www.bio-ontologies.org.uk/download/Bio-Ontologies2009.pdf. Please contact helpdesk@cisban.ac.uk for more information. This material may also be downloaded as a PDF (See Section 1).

Section 1 provides links to the downloadable files associated with this material. Section 2 is an overview of the rule-based mediation method. Section 3 describes the syntactic ontologyfiles associated with each data source from the submission, while Section 4 describes the core ontology, or core ontology. Section 5 lists, in full, each mapping description between the syntactic ontologies and the core ontology. Section 6 describes the results of running the mapping, and provides a discussion of those results.

Please note that this supplementary material should only be interpreted with the aid of the main submission.

There are a number of files associated with the work presented here and in the main submission. You can download them all in Section 1.



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