Discovery of RAD9 Proteins

Other than the rules described for the syntactic ontologies, some telomere ontology-specific rules needed to be created to aid querying.

The first two (TUO_00001 in Figure 12, and TUO_00002 in Figure 13) assign instances containing particular names or synonyms to the Rad9 class.

Figure 12: SWRL Rule TUO_00001
\begin{figure}$tuo:Protein(?someEntity)$ $\wedge$ \\
$tuo:synonym(?someEntity...
...oreCase(?s, \lq\lq rad9'')$ \\
$\rightarrow$ $tuo:Rad9(?someEntity)$\end{figure}

Figure 13: SWRL Rule TUO_00002.
\begin{figure}$tuo:Protein(?someEntity)$ $\wedge$ \\
$tuo:recommendedName(?so...
...oreCase(?s, ''rad9'')$ \\
$\rightarrow$ $tuo:Rad9(?someEntity)$\end{figure}

These two SWRL rules add the following instances to Rad9:

cpath:CPATH-92332
upkb:protein_0

These two instances can then be declared equivalent through the use of the owl:sameAs construct.



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