Uses of Class
uk.ac.cisban.rod.database.fuge.ActionApplication

Packages that use ActionApplication

uk.ac.cisban.rod.dao	Database access package containing all code for database access.
uk.ac.cisban.rod.dao.specifics	Grouping specific sets of tasks together in communication to the database.
uk.ac.cisban.rod.data	Manages all data incoming from the database and forwards database requests from the GUI.
uk.ac.cisban.rod.data.handlers	Handles all of the connections with the DAO and keeps track of the progress of the task.
uk.ac.cisban.rod.database.data	Storing experimental data classes.
uk.ac.cisban.rod.database.fuge	Protocol and Action classes inspired by the FuGE API.

Uses of ActionApplication in uk.ac.cisban.rod.dao

Methods in uk.ac.cisban.rod.dao that return ActionApplication

ActionApplication	DAO.addInoculation(java.lang.Long actionApplicationId, java.util.Set<Inoculation> logs, java.util.Map<java.lang.String,java.lang.Exception> exceptionMap, java.util.Map<java.lang.String,java.lang.String> barcodeSubs) Adds a set of Inoculation logs to an existing ActionApplication.
ActionApplication	DAO.addSpotting(java.lang.Long actionApplicationId, java.util.Collection<Spotting> logs, java.util.Map<java.lang.String,java.lang.Exception> exceptionMap, java.util.Map<java.lang.String,java.lang.String> barcodeSubs) Adds a set of Spotting logs to an existing ActionApplication.
ActionApplication	DAO.applyAction(long pAppId, long startACVId, long aCVId) Creates an ActionApplication in a ProtocolApplication based upon the trail of the ProtocolCV and ActionCV.
ActionApplication	Find.findActionApplication(javax.jdo.PersistenceManager pm, long identifier) Finds a ActionApplication given its database id.
ActionApplication	Find.findSpotLogs(javax.jdo.PersistenceManager pm, long actionApplicationId) Finds spot logs given an action application database id.
ActionApplication	Persist.newActionApplication(javax.jdo.PersistenceManager pm, ActionCV actionCV, ProtocolApplication protocolApp, PlateCV input, PlateCV output)
ActionApplication	Persist.newActionApplication(java.lang.String actionRefId, java.lang.Long protocolAppId)

Methods in uk.ac.cisban.rod.dao with parameters of type ActionApplication

void	Delete.deleteLogs(ActionApplication aApp) Deletes all LogEvents from the database for the ActionApplication.
void	Delete.deleteLogs(javax.jdo.PersistenceManager pm, ActionApplication aApp) Deletes from the database.

Uses of ActionApplication in uk.ac.cisban.rod.dao.specifics

Methods in uk.ac.cisban.rod.dao.specifics that return ActionApplication

ActionApplication	ManageLogs.addInoculation(java.lang.Long actionApplicationId, java.util.Set<Inoculation> logs, java.util.Map<java.lang.String,java.lang.Exception> exceptionMap, java.util.Map<java.lang.String,java.lang.String> barcodeSubs) Adds a set of Inoculation logs to an existing ActionApplication.
ActionApplication	ManageLogs.addSpotting(java.lang.Long actionApplicationId, java.util.Collection<Spotting> logs, java.util.Map<java.lang.String,java.lang.Exception> exceptionMap, java.util.Map<java.lang.String,java.lang.String> barcodeSubs) Adds a set of Spotting logs to an existing ActionApplication.
ActionApplication	ProtocolActionNavigation.createTrail(javax.jdo.PersistenceManager pm, ProtocolApplication sourceProtocolApp, ActionCV startActionCV, ActionCV targetActionCV) Creates an ActionApplication in a ProtocolApplication based upon the trail of the ProtocolCV and ActionCV.

Uses of ActionApplication in uk.ac.cisban.rod.data

Fields in uk.ac.cisban.rod.data with type parameters of type ActionApplication

protected java.util.SortedMap<ActionApplication,java.util.List<ActionApplication>>	DataManager.protocolApplication A map of the top-level ActionApplications to the ActionApplications that expect logs.
protected java.util.SortedMap<ActionApplication,java.util.List<ActionApplication>>	DataManager.protocolApplication A map of the top-level ActionApplications to the ActionApplications that expect logs.

Methods in uk.ac.cisban.rod.data that return ActionApplication

ActionApplication

DataManager.getPreviousApplication(java.lang.Long actionAppId) Returns the ActionApplication before the given actionAppId for purposes of checking for completion, etc.

Methods in uk.ac.cisban.rod.data that return types with arguments of type ActionApplication

java.util.SortedMap<ActionApplication,java.util.List<ActionApplication>>	DataManager.getProtocolApplication() Returns a map of the top-level ActionApplications to the ActionApplications that expect logs.
java.util.SortedMap<ActionApplication,java.util.List<ActionApplication>>	DataManager.getProtocolApplication() Returns a map of the top-level ActionApplications to the ActionApplications that expect logs.
java.util.List<ActionApplication>	DataManager.locateLogged(ActionApplication curr) From a top-level ActionApplication, finds the ActionApplications further down in the hierarchy that have LogEvents attached.

Methods in uk.ac.cisban.rod.data with parameters of type ActionApplication

java.util.List<ActionApplication>

DataManager.locateLogged(ActionApplication curr) From a top-level ActionApplication, finds the ActionApplications further down in the hierarchy that have LogEvents attached.

Uses of ActionApplication in uk.ac.cisban.rod.data.handlers

Methods in uk.ac.cisban.rod.data.handlers that return ActionApplication

ActionApplication	ParseInoculationTask.getActionApplication()
ActionApplication	ParseSpotTask.getActionApplication()

Uses of ActionApplication in uk.ac.cisban.rod.database.data

Fields in uk.ac.cisban.rod.database.data declared as ActionApplication

protected ActionApplication

LogEvent.actionApplication

Methods in uk.ac.cisban.rod.database.data that return ActionApplication

ActionApplication

LogEvent.getActionApplication()

Methods in uk.ac.cisban.rod.database.data with parameters of type ActionApplication

void	LogEvent.setActionApplication(ActionApplication actionApplication)

Constructors in uk.ac.cisban.rod.database.data with parameters of type ActionApplication

ImageSpot(ActionApplication aApp, java.util.Date loggingDate, PlatePosition platePosition)

Inoculation(ActionApplication aApp, java.util.Date loggingDate, PlatePosition sourcePlatePosition, PlatePosition destinationPlatePosition)

LogEvent(ActionApplication aApp, java.util.Date loggingDate, PlatePosition sourcePlatePosition)

Spotting(ActionApplication aApp, java.util.Date loggingDate, PlatePosition sourcePlatePosition, PlatePosition destinationPlatePosition)

Uses of ActionApplication in uk.ac.cisban.rod.database.fuge

Methods in uk.ac.cisban.rod.database.fuge that return types with arguments of type ActionApplication

java.util.List<ActionApplication>

ProtocolApplication.getActions()

Method parameters in uk.ac.cisban.rod.database.fuge with type arguments of type ActionApplication

void	ProtocolApplication.setActions(java.util.List<ActionApplication> actions)