Uses of Class
uk.ac.cisban.rod.database.fuge.ProtocolApplication

Packages that use ProtocolApplication

uk.ac.cisban.rod.dao	Database access package containing all code for database access.
uk.ac.cisban.rod.dao.specifics	Grouping specific sets of tasks together in communication to the database.
uk.ac.cisban.rod.database.data	Storing experimental data classes.
uk.ac.cisban.rod.database.fuge	Protocol and Action classes inspired by the FuGE API.

Uses of ProtocolApplication in uk.ac.cisban.rod.dao

Methods in uk.ac.cisban.rod.dao that return ProtocolApplication

ProtocolApplication	Find.findProtocolApplication(javax.jdo.PersistenceManager pm, long id) Finds a ProtocolApplication given its database id.
ProtocolApplication	Persist.newProtocolApplication(java.lang.Long protocolRefId, java.lang.String inputPlateCVId, java.lang.String outputPlateCVId)

Methods in uk.ac.cisban.rod.dao with parameters of type ProtocolApplication

void	DAO.iterateProtocol(ProtocolApplication protocol) Iterates through a ProtocolApplication and its ActionApplications recursively.
ActionApplication	Persist.newActionApplication(javax.jdo.PersistenceManager pm, ActionCV actionCV, ProtocolApplication protocolApp, PlateCV input, PlateCV output)

Uses of ProtocolApplication in uk.ac.cisban.rod.dao.specifics

Methods in uk.ac.cisban.rod.dao.specifics with parameters of type ProtocolApplication

ActionApplication

ProtocolActionNavigation.createTrail(javax.jdo.PersistenceManager pm, ProtocolApplication sourceProtocolApp, ActionCV startActionCV, ActionCV targetActionCV) Creates an ActionApplication in a ProtocolApplication based upon the trail of the ProtocolCV and ActionCV.

Uses of ProtocolApplication in uk.ac.cisban.rod.database.data

Methods in uk.ac.cisban.rod.database.data that return ProtocolApplication

ProtocolApplication

Repeat.getProtocolApplication()

Methods in uk.ac.cisban.rod.database.data with parameters of type ProtocolApplication

void	Repeat.setProtocolApplication(ProtocolApplication protocolApplication)

Constructors in uk.ac.cisban.rod.database.data with parameters of type ProtocolApplication

Repeat(java.lang.String description, Experiment experiment, MasterplateSet masterplateSet, ProtocolApplication protocolApplication)

Uses of ProtocolApplication in uk.ac.cisban.rod.database.fuge

Methods in uk.ac.cisban.rod.database.fuge that return ProtocolApplication

ProtocolApplication

ActionApplication.getSubProtocolApplicationRef()

Methods in uk.ac.cisban.rod.database.fuge with parameters of type ProtocolApplication

void	ActionApplication.setSubProtocolApplicationRef(ProtocolApplication subProtocolApplicationRef)