Serialized Form


Package uk.ac.cisban.rod.exception

Class uk.ac.cisban.rod.exception.AlreadyExistsException extends java.lang.Exception implements Serializable

Class uk.ac.cisban.rod.exception.IncorrectInputException extends java.lang.Exception implements Serializable

Serialized Fields

source

javax.swing.JComponent source

Class uk.ac.cisban.rod.exception.PlateTypeMismatch extends java.lang.Exception implements Serializable

Class uk.ac.cisban.rod.exception.QueryNotFoundException extends java.lang.Exception implements Serializable

Class uk.ac.cisban.rod.exception.ScreenIncompleteException extends java.lang.Exception implements Serializable


Package uk.ac.cisban.rod.gui

Class uk.ac.cisban.rod.gui.DeleteROD extends javax.swing.JFrame implements Serializable

Serialized Fields

aboutMenuItem

javax.swing.JMenuItem aboutMenuItem

contentsMenuItem

javax.swing.JMenuItem contentsMenuItem

copyMenuItem

javax.swing.JMenuItem copyMenuItem

cutMenuItem

javax.swing.JMenuItem cutMenuItem

deleteMenuItem

javax.swing.JMenuItem deleteMenuItem

editMenu

javax.swing.JMenu editMenu

exitMenuItem

javax.swing.JMenuItem exitMenuItem

experimentsBox

javax.swing.JComboBox experimentsBox

experimentsButton

javax.swing.JButton experimentsButton

fileMenu

javax.swing.JMenu fileMenu

helpMenu

javax.swing.JMenu helpMenu

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

masterplateSetsBox

javax.swing.JComboBox masterplateSetsBox

menuBar

javax.swing.JMenuBar menuBar

mpsButton

javax.swing.JButton mpsButton

openMenuItem

javax.swing.JMenuItem openMenuItem

pasteMenuItem

javax.swing.JMenuItem pasteMenuItem

progressBar

javax.swing.JProgressBar progressBar

repeatBox

javax.swing.JComboBox repeatBox

saveAsMenuItem

javax.swing.JMenuItem saveAsMenuItem

saveMenuItem

javax.swing.JMenuItem saveMenuItem

taskOutput

javax.swing.JLabel taskOutput

Class uk.ac.cisban.rod.gui.RodFrame extends javax.swing.JFrame implements Serializable

Class uk.ac.cisban.rod.gui.RODTree extends javax.swing.JFrame implements Serializable

Serialized Fields

experimentRoot

javax.swing.tree.DefaultMutableTreeNode experimentRoot

protocolRoot

javax.swing.tree.DefaultMutableTreeNode protocolRoot

aboutMenuItem

javax.swing.JMenuItem aboutMenuItem

contentsMenuItem

javax.swing.JMenuItem contentsMenuItem

copyMenuItem

javax.swing.JMenuItem copyMenuItem

cutMenuItem

javax.swing.JMenuItem cutMenuItem

deleteButton

javax.swing.JButton deleteButton

deleteMenuItem

javax.swing.JMenuItem deleteMenuItem

editMenu

javax.swing.JMenu editMenu

exitMenuItem

javax.swing.JMenuItem exitMenuItem

experimentBox

javax.swing.JComboBox experimentBox

experimentTree

javax.swing.JTree experimentTree

fileMenu

javax.swing.JMenu fileMenu

helpMenu

javax.swing.JMenu helpMenu

jButton1

javax.swing.JButton jButton1

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jSplitPane1

javax.swing.JSplitPane jSplitPane1

menuBar

javax.swing.JMenuBar menuBar

openMenuItem

javax.swing.JMenuItem openMenuItem

pasteMenuItem

javax.swing.JMenuItem pasteMenuItem

progressBar

javax.swing.JProgressBar progressBar

protocolTree

javax.swing.JTree protocolTree

repeatBox

javax.swing.JComboBox repeatBox

saveAsMenuItem

javax.swing.JMenuItem saveAsMenuItem

saveMenuItem

javax.swing.JMenuItem saveMenuItem

taskOutput

javax.swing.JLabel taskOutput

currentExperiment

Experiment currentExperiment

currentRepeat

Repeat currentRepeat

Package uk.ac.cisban.rod.gui.core

Class uk.ac.cisban.rod.gui.core.RodDesktopPane extends javax.swing.JDesktopPane implements Serializable

Serialized Fields

topPanel

java.awt.Component topPanel

bottomPanel

java.awt.Component bottomPanel

frameBounds

java.awt.Dimension frameBounds

topHeight

int topHeight

fudgeFactor

int fudgeFactor

Class uk.ac.cisban.rod.gui.core.RodDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

buttonPanel

javax.swing.JPanel buttonPanel

okMoreButton

javax.swing.JButton okMoreButton

CANCEL_CMD

java.lang.String CANCEL_CMD

logger

org.slf4j.Logger logger

listeners

java.util.List<E> listeners

Package uk.ac.cisban.rod.gui.functions

Class uk.ac.cisban.rod.gui.functions.ChangeNameAndDescription extends javax.swing.JPanel implements Serializable

Serialized Fields

nameField

javax.swing.JTextField nameField

descArea

javax.swing.JTextArea descArea

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

element

java.lang.String element

listeners

java.util.List<E> listeners

Class uk.ac.cisban.rod.gui.functions.TextTransferHandler extends javax.swing.TransferHandler implements Serializable

Serialized Fields

p0

javax.swing.text.Position p0

p1

javax.swing.text.Position p1

Package uk.ac.cisban.rod.gui.inset

Class uk.ac.cisban.rod.gui.inset.ActionCVContainer extends javax.swing.JPanel implements Serializable

Serialized Fields

actionCV

ActionCV actionCV

Class uk.ac.cisban.rod.gui.inset.ExperimentInset extends javax.swing.JPanel implements Serializable

Serialized Fields

chosen

int chosen

LOADED

java.lang.String LOADED

NOT_LOADED

java.lang.String NOT_LOADED

logger

org.slf4j.Logger logger

loadedPanel

javax.swing.JComponent loadedPanel

currentRep

Repeat currentRep

noReps

int noReps

newRepListener

java.awt.event.ActionListener newRepListener

boxListener

java.awt.event.ActionListener boxListener

Class uk.ac.cisban.rod.gui.inset.ExperimentInset.RepeatComboBoxSorterModel extends javax.swing.DefaultComboBoxModel implements Serializable

Class uk.ac.cisban.rod.gui.inset.ImageInset extends Inset implements Serializable

Serialized Fields

logger

org.slf4j.Logger logger

imagePanel

LoadLogDialog imagePanel

completedSuccessfully

boolean completedSuccessfully

disabled

boolean disabled

Class uk.ac.cisban.rod.gui.inset.InocInset extends Inset implements Serializable

Serialized Fields

logger

org.slf4j.Logger logger

inocPanel

LoadLogDialog inocPanel

Class uk.ac.cisban.rod.gui.inset.Inset extends javax.swing.JPanel implements Serializable

Serialized Fields

LOADED

java.lang.String LOADED

NOT_LOADED

java.lang.String NOT_LOADED

LOADING

java.lang.String LOADING

listeners

java.util.List<E> listeners

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

nextPanel

javax.swing.JComponent nextPanel

okCancelPanel

javax.swing.JComponent okCancelPanel

loadedPanel

javax.swing.JComponent loadedPanel

loadingPanel

javax.swing.JComponent loadingPanel

actionApplicationId

long actionApplicationId

actionCVId

long actionCVId

sourceACV

long sourceACV

superlogger

org.slf4j.Logger superlogger

Class uk.ac.cisban.rod.gui.inset.LoadLogDialog extends javax.swing.JPanel implements Serializable

Serialized Fields

selectedFile

java.io.File selectedFile

fileField

javax.swing.JTextField fileField

componentToDisable

java.awt.Component componentToDisable

Class uk.ac.cisban.rod.gui.inset.SpotInset extends Inset implements Serializable

Serialized Fields

logger

org.slf4j.Logger logger

logPanel

LoadLogDialog logPanel

completedSuccessfully

boolean completedSuccessfully

disabled

boolean disabled

Package uk.ac.cisban.rod.gui.popup

Class uk.ac.cisban.rod.gui.popup.AddTreatmentPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

barcodesTextArea

javax.swing.JTextArea barcodesTextArea

dateTextField

javax.swing.JTextField dateTextField

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jScrollPane1

javax.swing.JScrollPane jScrollPane1

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

treatmentComboBox

javax.swing.JComboBox treatmentComboBox

dateFormat

java.text.SimpleDateFormat dateFormat

date

java.util.Date date

Class uk.ac.cisban.rod.gui.popup.ErrorPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

errorsTextArea

javax.swing.JTextArea errorsTextArea

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jScrollPane1

javax.swing.JScrollPane jScrollPane1

Class uk.ac.cisban.rod.gui.popup.ExportMultiplePanel extends javax.swing.JPanel implements Serializable

Serialized Fields

mouseListener

java.awt.event.MouseListener mouseListener
MouseListener swaps items from one list to another if double click is registered.


swapButtonListener

java.awt.event.ActionListener swapButtonListener
ActionListener to swap all selected items in a JList over to the other JList


saveLocation

java.awt.event.ActionListener saveLocation
Opens a directory-only JFileChooser for the user to choose where the exported experiments will be saved to.


add

javax.swing.JButton add

browse

javax.swing.JButton browse

experimentList

javax.swing.JList experimentList

exportList

javax.swing.JList exportList

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jPanel1

javax.swing.JPanel jPanel1

jPanel2

javax.swing.JPanel jPanel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

progressBar

javax.swing.JProgressBar progressBar

remove

javax.swing.JButton remove

saveFolder

javax.swing.JTextField saveFolder

taskOutput

javax.swing.JLabel taskOutput

directory

java.io.File directory

experimentListModel

ExportMultiplePanel.SortedListModel experimentListModel

exportListModel

ExportMultiplePanel.SortedListModel exportListModel

Class uk.ac.cisban.rod.gui.popup.ExportMultiplePanel.SortedListModel extends javax.swing.DefaultListModel implements Serializable

Class uk.ac.cisban.rod.gui.popup.ExportPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

afile

java.io.File afile

jLabel2

javax.swing.JLabel jLabel2

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

Class uk.ac.cisban.rod.gui.popup.LoadExperimentPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

box

javax.swing.JComboBox box

descriptionTextArea

javax.swing.JScrollPane descriptionTextArea

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jTextArea1

javax.swing.JTextArea jTextArea1

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

selectedExperiment

Experiment selectedExperiment

Class uk.ac.cisban.rod.gui.popup.NewCVPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

descriptionField

javax.swing.JTextArea descriptionField

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jScrollPane1

javax.swing.JScrollPane jScrollPane1

nameField

javax.swing.JTextField nameField

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

cvType

java.lang.String cvType

listener

java.awt.event.ActionListener listener

Class uk.ac.cisban.rod.gui.popup.NewExperimentPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

aboutProtocolsButton

javax.swing.JButton aboutProtocolsButton

descriptionTextArea

javax.swing.JTextArea descriptionTextArea

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jLabel4

javax.swing.JLabel jLabel4

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

masterplateListBox

javax.swing.JList masterplateListBox

nameTextField

javax.swing.JTextField nameTextField

progressBar

javax.swing.JProgressBar progressBar

protocolComboBox

javax.swing.JComboBox protocolComboBox

taskOutput

javax.swing.JLabel taskOutput

protocolCV

ProtocolCV protocolCV

Class uk.ac.cisban.rod.gui.popup.NewMasterPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

barcodeTextArea

javax.swing.JTextArea barcodeTextArea

descriptionField

javax.swing.JTextField descriptionField

fileField

javax.swing.JTextField fileField

jButton1

javax.swing.JButton jButton1

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jLabel4

javax.swing.JLabel jLabel4

jLabel5

javax.swing.JLabel jLabel5

jLabel6

javax.swing.JLabel jLabel6

jPanel1

javax.swing.JPanel jPanel1

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jTextArea1

javax.swing.JTextArea jTextArea1

masterComboBox

javax.swing.JComboBox masterComboBox

mutationComboBox

javax.swing.JComboBox mutationComboBox

plateTypeBox

javax.swing.JComboBox plateTypeBox

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

selectedFile

java.io.File selectedFile

Class uk.ac.cisban.rod.gui.popup.NewMediumPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

boxListener

java.awt.event.ActionListener boxListener
Action listener for JComboBoxes on the form. Stores selected value in combo box when selection made.


listSelectionListener

javax.swing.event.ListSelectionListener listSelectionListener
ListSelectionListener for all JLists on panel.


anti

javax.swing.JList anti

auxo

javax.swing.JList auxo

carbon

javax.swing.JList carbon

description

javax.swing.JTextArea description

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jPanel1

javax.swing.JPanel jPanel1

jPanel2

javax.swing.JPanel jPanel2

jPanel3

javax.swing.JPanel jPanel3

jPanel4

javax.swing.JPanel jPanel4

jPanel5

javax.swing.JPanel jPanel5

jPanel6

javax.swing.JPanel jPanel6

jScrollPane1

javax.swing.JScrollPane jScrollPane1

jScrollPane2

javax.swing.JScrollPane jScrollPane2

jScrollPane3

javax.swing.JScrollPane jScrollPane3

jScrollPane4

javax.swing.JScrollPane jScrollPane4

nameDisplay

javax.swing.JTextField nameDisplay

progressBar

javax.swing.JProgressBar progressBar

state

javax.swing.JComboBox state

taskOutput

javax.swing.JLabel taskOutput

type

javax.swing.JComboBox type

auxs

java.lang.String auxs

antis

java.lang.String antis

carbons

java.lang.String carbons

name

java.lang.String name

stateChoice

java.lang.String stateChoice

typeChoice

java.lang.String typeChoice

nameIncr

int nameIncr

Class uk.ac.cisban.rod.gui.popup.NewRepeat extends javax.swing.JPanel implements Serializable

Serialized Fields

experimentText

javax.swing.JTextField experimentText

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jLabel4

javax.swing.JLabel jLabel4

masterplateComboBox

javax.swing.JComboBox masterplateComboBox

progressBar

javax.swing.JProgressBar progressBar

protocolText

javax.swing.JTextField protocolText

taskOutput

javax.swing.JLabel taskOutput

description

java.lang.String description

experimentId

java.lang.String experimentId

Class uk.ac.cisban.rod.gui.popup.PlatePourPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

barcodesTextArea

javax.swing.JTextArea barcodesTextArea

dateTextField

javax.swing.JTextField dateTextField

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jScrollPane2

javax.swing.JScrollPane jScrollPane2

mediumComboBox

javax.swing.JComboBox mediumComboBox

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

date

java.util.Date date

sdf

java.text.SimpleDateFormat sdf

selectedMed

MediumCV selectedMed

plateCV

PlateCV plateCV

Class uk.ac.cisban.rod.gui.popup.ResizeableDialog extends javax.swing.JDialog implements Serializable


Package uk.ac.cisban.rod.gui.popup.view

Class uk.ac.cisban.rod.gui.popup.view.MasterPlateRecall extends javax.swing.JPanel implements Serializable

Serialized Fields

setList

java.util.Collection<E> setList

master

NewMasterPanel master

logger

org.slf4j.Logger logger

masterComboBox

javax.swing.JComboBox masterComboBox

Class uk.ac.cisban.rod.gui.popup.view.MasterPlateSets extends javax.swing.JPanel implements Serializable

Serialized Fields

barcodeTextArea

javax.swing.JTextArea barcodeTextArea

descriptionField

javax.swing.JTextField descriptionField

innerPanel

javax.swing.JPanel innerPanel

jLabel1

javax.swing.JLabel jLabel1

jLabel2

javax.swing.JLabel jLabel2

jLabel3

javax.swing.JLabel jLabel3

jLabel4

javax.swing.JLabel jLabel4

jLabel5

javax.swing.JLabel jLabel5

jScrollPane2

javax.swing.JScrollPane jScrollPane2

libraryField

javax.swing.JTextField libraryField

masterplateSetsBox

javax.swing.JComboBox masterplateSetsBox

mutationField

javax.swing.JTextField mutationField

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

setList

java.util.Collection<E> setList

Class uk.ac.cisban.rod.gui.popup.view.MediumRecall extends javax.swing.JPanel implements Serializable

Serialized Fields

master

NewMedium master

setList

java.util.Collection<E> setList

comboBox

javax.swing.JComboBox comboBox

renameMedium

RenameMedium renameMedium

Class uk.ac.cisban.rod.gui.popup.view.NewMedium extends javax.swing.JPanel implements Serializable

Serialized Fields

descriptionField

javax.swing.JTextArea descriptionField
Deprecated. 

nameField

javax.swing.JTextField nameField
Deprecated. 

progressBar

javax.swing.JProgressBar progressBar
Deprecated. 

taskOutput

javax.swing.JLabel taskOutput
Deprecated. 

Class uk.ac.cisban.rod.gui.popup.view.NewTreatment extends javax.swing.JPanel implements Serializable

Serialized Fields

descriptionArea

javax.swing.JTextArea descriptionArea
Deprecated. 

nameField

javax.swing.JTextField nameField
Deprecated. 

progressBar

javax.swing.JProgressBar progressBar
Deprecated. 

taskOutput

javax.swing.JLabel taskOutput
Deprecated. 

Class uk.ac.cisban.rod.gui.popup.view.PlateRecall extends javax.swing.JPanel implements Serializable

Serialized Fields

tableModel

javax.swing.table.DefaultTableModel tableModel

progressBar

javax.swing.JProgressBar progressBar

taskOutput

javax.swing.JLabel taskOutput

logger

org.slf4j.Logger logger

Class uk.ac.cisban.rod.gui.popup.view.TreatmentRecall extends javax.swing.JPanel implements Serializable

Serialized Fields

master

NewTreatment master

logger

org.slf4j.Logger logger

list

java.util.List<E> list

progressBar

javax.swing.JProgressBar progressBar

comboBox

javax.swing.JComboBox comboBox

isDone

boolean isDone

renameTreatment

RenameTreatment renameTreatment



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