ROD 3.0-beta API

Packages
uk.ac.cisban.rod ROD is covered under the GNU Lesser General Public License (LGPL).
uk.ac.cisban.rod.dao Database access package containing all code for database access.
uk.ac.cisban.rod.dao.specifics Grouping specific sets of tasks together in communication to the database.
uk.ac.cisban.rod.data Manages all data incoming from the database and forwards database requests from the GUI.
uk.ac.cisban.rod.data.handlers Handles all of the connections with the DAO and keeps track of the progress of the task.
uk.ac.cisban.rod.data.util Utility classes for data management.
uk.ac.cisban.rod.database Contains the JDO database code for ROD.
uk.ac.cisban.rod.database.cv Controlled vocabulary classes.
uk.ac.cisban.rod.database.data Storing experimental data classes.
uk.ac.cisban.rod.database.fuge Protocol and Action classes inspired by the FuGE API.
uk.ac.cisban.rod.database.plates Stores everything to do with plates, including barcodes, positions, etc.
uk.ac.cisban.rod.exception Exception classes for ROD-specific events.
uk.ac.cisban.rod.export Handles exporting experiments to file.
uk.ac.cisban.rod.gui Control classes for the ROD GUI and also some helper mini-applications that are useful for debugging and maintaining ROD.
uk.ac.cisban.rod.gui.core Parts of the interface that are always visible at any stage of working in ROD.
uk.ac.cisban.rod.gui.functions Functions that are used repeatedly through the interface for specific tasks.
uk.ac.cisban.rod.gui.functions.fill Retrieve commonly-requested lists from the database and populate JComboBoxes.
uk.ac.cisban.rod.gui.inset All GUI classes that are inset into RodDesktopPane or its children.
uk.ac.cisban.rod.gui.popup All popup windows in ROD.
uk.ac.cisban.rod.gui.popup.view Classes that view existing entries in the database.
uk.ac.cisban.rod.parsing.logfiles Parsers for log files.
uk.ac.cisban.rod.parsing.masterplateset Parser for Master plate set files.
uk.ac.cisban.rod.parsing.util Utility classes for parsing.

 



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